../../tmp/servers/virsirnadb/1866383848
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1011 | 1 | tgatatgttgaatgttaat | 19 | |
| M59808.1 | HPA18F Hepatitis A virus polyprotein RNA, complete cds | 4809 | ................... | 4827 | 100 |
| M59810.1 | HPA24A Hepatitis A virus polyprotein RNA, complete cds | 4810 | ................... | 4828 | 100 |
| M59809.1 | HPA43C Hepatitis A virus polyprotein RNA, complete cds | 4809 | ................... | 4827 | 100 |
| M16632.1 | HPAA Hepatitis A virus (attenuated) RNA, complete genome | 4821 | ................... | 4839 | 100 |
| K02990.1 | HPAACG Human hepatitis A virus, complete genome | 4825 | ................... | 4843 | 100 |
| K02990.1 | HPAACG Human hepatitis A virus, complete genome | 2807 | ___..at.........___ | 2795 | 57 |
| X75214.1 | Hepatitis A virus GBM/FRhK RNA | 4761 | ................... | 4779 | 100 |
| X75215.1 | Hepatitis A virus GBM/WT RNA | 4779 | ................... | 4797 | 100 |
| X75216.1 | Hepatitis A virus GBM/HFS RNA | 4779 | ................... | 4797 | 100 |
| X83302.1 | Hepatitis A virus complete genome | 4779 | ................... | 4797 | 100 |
| AB020565.1 | Hepatitis A virus genomic RNA, complete sequence, isolate AH2 | 4825 | ................... | 4843 | 100 |
| AB020566.1 | Hepatitis A virus genomic RNA, complete sequence, isolate AH3 | 4826 | ................... | 4844 | 100 |
| AB020567.1 | Hepatitis A virus genomic RNA, complete sequence, isolate FH1 | 4825 | ................... | 4843 | 100 |
| AB020569.1 | Hepatitis A virus genomic RNA, complete sequence, isolate FH3 | 4825 | ................... | 4843 | 100 |
| AF268396.1 | Hepatitis A virus polyprotein precursor, gene, complete cds | 4816 | ................... | 4834 | 100 |
| AY644676.1 | Hepatitis A virus isolate CF53/Berne, complete genome | 4777 | ................... | 4795 | 100 |
| AY644676.1 | Hepatitis A virus isolate CF53/Berne, complete genome | 2836 | __.a.........______ | 2826 | 52 |
| AY644676.1 | Hepatitis A virus isolate CF53/Berne, complete genome | 5617 | __________......... | 5625 | 47 |
| DQ646426.1 | Hepatitis A virus strain IVA, complete genome | 4842 | ................... | 4860 | 100 |
| EF406357.1 | Hepatitis A virus strain H2 polyprotein gene, complete cds | 4772 | ................... | 4790 | 100 |
| EU131373.1 | Hepatitis A virus genomic RNA, complete sequence, isolate HAV5 | 4826 | ................... | 4844 | 100 |
| EU526088.1 | Hepatitis A virus isolate HAV6, complete genome | 4824 | ................... | 4842 | 100 |
| EU526089.1 | Hepatitis A virus isolate HAV12, complete genome | 4826 | ................... | 4844 | 100 |
| HM769724.1 | Hepatitis A virus isolate HAV-Arg/06, complete genome | 4825 | ................... | 4843 | 100 |
| HM769724.1 | Hepatitis A virus isolate HAV-Arg/06, complete genome | 2807 | ___..at.........___ | 2795 | 57 |
| M14707.1 | HPA Hepatitis A virus (wild-type) RNA, complete genome | 4826 | ................... | 4844 | 100 |
| M20273.1 | HPACG Human hepatitis virus type A RNA, complete genome | 4818 | ...............c... | 4836 | 94 |
| AB020564.1 | Hepatitis A virus genomic RNA, complete sequence, isolate AH1 | 4825 | .........a......... | 4843 | 94 |
| AB020568.1 | Hepatitis A virus genomic RNA, complete sequence, isolate FH2 | 4826 | .........a......... | 4844 | 94 |
| AF314208.1 | Hepatitis A virus polyprotein gene, complete cds | 4828 | ...............c... | 4846 | 94 |
| AF485328.1 | Hepatitis A virus isolate LY6, complete genome | 4825 | .........a......... | 4843 | 94 |
| AF357222.1 | Hepatitis A virus isolate LU38/WT polyprotein gene, complete cds | 4825 | .........a......... | 4843 | 94 |
| AF512536.1 | Hepatitis A virus isolate DL3, complete genome | 4824 | .........a......... | 4842 | 94 |
| AY644337.1 | Hepatitis A virus strain HMH polyprotein gene, partial cds | 4762 | .........a......... | 4780 | 94 |
| AY644337.1 | Hepatitis A virus strain HMH polyprotein gene, partial cds | 5608 | __________......... | 5616 | 47 |
| AY644337.1 | Hepatitis A virus strain HMH polyprotein gene, partial cds | 6833 | __________......... | 6841 | 47 |
| EF406358.1 | Hepatitis A virus strain H2K5 polyprotein gene, complete cds | 4775 | ...............c... | 4793 | 94 |
| EF406359.1 | Hepatitis A virus strain H2K10 polyprotein gene, complete cds | 4774 | ...............c... | 4792 | 94 |
| EF406360.1 | Hepatitis A virus strain H2K15 polyprotein gene, complete cds | 4775 | ...............c... | 4793 | 94 |
| EF406361.1 | Hepatitis A virus strain H2K20 polyprotein gene, complete cds | 4775 | ...............c... | 4793 | 94 |
| EF406362.1 | Hepatitis A virus strain H2K25 polyprotein gene, complete cds | 4775 | ...............c... | 4793 | 94 |
| EF406363.1 | Hepatitis A virus strain H2K30 polyprotein gene, complete cds | 4775 | ...............c... | 4793 | 94 |
| AB279732.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HA-JNG04-90 | 4807 | ...............c... | 4825 | 94 |
| AB279732.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HA-JNG04-90 | 5653 | __________......... | 5661 | 47 |
| AB279732.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HA-JNG04-90 | 6878 | __________......... | 6886 | 47 |
| AB279733.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HA-JNG08-92 | 4807 | .........a......... | 4825 | 94 |
| AB279733.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HA-JNG08-92 | 5653 | __________......... | 5661 | 47 |
| AB279733.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HA-JNG08-92 | 6878 | __________......... | 6886 | 47 |
| AB279734.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HAJ95-8 | 4808 | .........a......... | 4826 | 94 |
| AB279734.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HAJ95-8 | 5654 | __________......... | 5662 | 47 |
| AB279734.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HAJ95-8 | 6879 | __________......... | 6887 | 47 |
| EU251188.1 | Hepatitis A virus strain VBA-07, complete genome | 4841 | .........a......... | 4859 | 94 |
| HQ437707.1 | Hepatitis A virus strain HepA-293, complete genome | 4841 | .........a......... | 4859 | 94 |
| AB258387.1 | Hepatitis A virus genomic RNA, complete genome, subgenotype IIIB, clo | 4807 | ...c.............._ | 4824 | 89 |
| AB258387.1 | Hepatitis A virus genomic RNA, complete genome, subgenotype IIIB, clo | 2866 | __.a.........______ | 2856 | 52 |
| AB258387.1 | Hepatitis A virus genomic RNA, complete genome, subgenotype IIIB, clo | 5653 | __________......... | 5661 | 47 |
| AB300205.1 | Hepatitis A virus genomic RNA, complete genome, sub_strain: KRM238G59 | 4808 | ...c.............._ | 4825 | 89 |
| AB300205.1 | Hepatitis A virus genomic RNA, complete genome, sub_strain: KRM238G59 | 5654 | __________......... | 5662 | 47 |
| AB279735.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HAJ85-1 | 4807 | ...c.............._ | 4824 | 89 |
| AB279735.1 | Hepatitis A virus genomic RNA, complete genome, isolate: HAJ85-1 | 5653 | __________......... | 5661 | 47 |
| AB425339.1 | Hepatitis A virus genomic RNA, complete genome, sub_strain: KRM003G72 | 4807 | ...c.............._ | 4824 | 89 |
| AB425339.1 | Hepatitis A virus genomic RNA, complete genome, sub_strain: KRM003G72 | 5653 | __________......... | 5661 | 47 |
| AJ299464.3 | Hepatitis A virus polyprotein, genomic RNA, strain NOR-21 | 4729 | .........a.....c... | 4747 | 89 |
| AJ299464.3 | Hepatitis A virus polyprotein, genomic RNA, strain NOR-21 | 5575 | __________......... | 5583 | 47 |
| AJ299464.3 | Hepatitis A virus polyprotein, genomic RNA, strain NOR-21 | 6800 | __________......... | 6808 | 47 |
| DQ991029.1 | Hepatitis A virus isolate CP-IND, complete genome | 4808 | .........a.....c... | 4826 | 89 |
| DQ991029.1 | Hepatitis A virus isolate CP-IND, complete genome | 2785 | ________.........__ | 2777 | 47 |
| DQ991029.1 | Hepatitis A virus isolate CP-IND, complete genome | 5654 | __________......... | 5662 | 47 |
| DQ991029.1 | Hepatitis A virus isolate CP-IND, complete genome | 6879 | __________......... | 6887 | 47 |
| DQ991030.1 | Hepatitis A virus isolate GBS-IND, complete genome | 4808 | .........a.....c... | 4826 | 89 |
| DQ991030.1 | Hepatitis A virus isolate GBS-IND, complete genome | 5654 | __________......... | 5662 | 47 |
| DQ991030.1 | Hepatitis A virus isolate GBS-IND, complete genome | 6879 | __________......... | 6887 | 47 |
| DQ991030.1 | Hepatitis A virus isolate GBS-IND, complete genome | 7121 | _________........._ | 7113 | 47 |
| EF207320.1 | Hepatitis A virus strain LP014, complete genome | 4779 | ...c.....a......... | 4797 | 89 |
| EU011791.1 | Hepatitis A virus isolate PN-IND, complete genome | 4771 | .........a.....c... | 4789 | 89 |
| EU011791.1 | Hepatitis A virus isolate PN-IND, complete genome | 6842 | __________......... | 6850 | 47 |
| EU011791.1 | Hepatitis A virus isolate PN-IND, complete genome | 7084 | _________........._ | 7076 | 47 |
| FJ360730.1 | Hepatitis A virus isolate IND-HAV-06F, complete genome | 4807 | .........a.....c... | 4825 | 89 |
| FJ360730.1 | Hepatitis A virus isolate IND-HAV-06F, complete genome | 5653 | __________......... | 5661 | 47 |
| FJ360730.1 | Hepatitis A virus isolate IND-HAV-06F, complete genome | 6878 | __________......... | 6886 | 47 |
| FJ360733.1 | Hepatitis A virus isolate IND-HAV-95F, complete genome | 4807 | .........a.....c... | 4825 | 89 |
| FJ360733.1 | Hepatitis A virus isolate IND-HAV-95F, complete genome | 2784 | ________.........__ | 2776 | 47 |
| FJ360733.1 | Hepatitis A virus isolate IND-HAV-95F, complete genome | 5653 | __________......... | 5661 | 47 |
| FJ360733.1 | Hepatitis A virus isolate IND-HAV-95F, complete genome | 6878 | __________......... | 6886 | 47 |
| FJ360735.1 | Hepatitis A virus isolate IND-HAV-97F, complete genome | 4807 | .........a.....c... | 4825 | 89 |
| FJ360735.1 | Hepatitis A virus isolate IND-HAV-97F, complete genome | 5653 | __________......... | 5661 | 47 |
| FJ360735.1 | Hepatitis A virus isolate IND-HAV-97F, complete genome | 6878 | __________......... | 6886 | 47 |
| FJ360735.1 | Hepatitis A virus isolate IND-HAV-97F, complete genome | 7120 | _________........._ | 7112 | 47 |
| D00924.1 | SHVAGM27 Simian hepatitis A virus gene for polyprotein, complete cds | 442 | _____.........g.___ | 432 | 52 |
| D00924.1 | SHVAGM27 Simian hepatitis A virus gene for polyprotein, complete cds | 6838 | __________......... | 6846 | 47 |
| EU140838.1 | Simian hepatitis A virus, complete genome | 442 | _____.........g.___ | 432 | 52 |
| EU140838.1 | Simian hepatitis A virus, complete genome | 6838 | __________......... | 6846 | 47 |
| AY644670.1 | Hepatitis A virus strain SLF88, complete genome | 5622 | __________......... | 5630 | 47 |
| FJ360731.1 | Hepatitis A virus isolate IND-HAV-07F, complete genome | 5653 | __________......... | 5661 | 47 |
| FJ360731.1 | Hepatitis A virus isolate IND-HAV-07F, complete genome | 6878 | __________......... | 6886 | 47 |
| FJ360732.1 | Hepatitis A virus isolate IND-HAV-08F, complete genome | 5653 | __________......... | 5661 | 47 |
| FJ360732.1 | Hepatitis A virus isolate IND-HAV-08F, complete genome | 6878 | __________......... | 6886 | 47 |
| FJ360734.1 | Hepatitis A virus isolate IND-HAV-99F, complete genome | 5653 | __________......... | 5661 | 47 |
| FJ360734.1 | Hepatitis A virus isolate IND-HAV-99F, complete genome | 6878 | __________......... | 6886 | 47 |